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Paper ID:IJSREM65459

Bytecode-to-Graph: Multi-Class Malware Classification via Modified Deep GCN with Explainability Overlay

Stream/Area:

-

Subject:

-

Paper ID:

IJSREM65459

Volume:

10 |

6 |

Jun 2026

Pages:

1-9

Publication Frequency:

Monthly (12 issues per year)

DOI
Digital Object Identifier
Not assigned

License:International Journal of Scientific Research in Engineering and Management follows the Creative Commons Attribution 4.0 (CC BY 4.0) License, allowing free use and distribution with proper attribution.

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Authors

DJ

Durva Joshi

Department of Computer Science

RMD Sinhgad College of Engineering

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RU

Rikisha Ubale

Department of Computer Science

RMD Sinhgad College of Engineering

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RU

Reena Ughade

Department of Computer Science

RMD Sinhgad College of Engineering

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Mentors

MD

Manisha Darak

Department of Computer Science

RMD Sinhgad College of Engineering

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Abstract

Malware has become both more prevalent and considerably harder to detect, as signature-based methods struggle to keep pace with polymorphic and obfuscated code. This work presents a novel approach that converts binary files into graph structures and feeds them into a modified Deep Graph Convolutional Network (DeeperGCN), allowing the model to capture inter-instruction relationships that sequence-based models often miss. To ensure transparency, the classifier is integrated with Gradient-weighted Class Activation Mapping (Grad-CAM), which produces heatmaps highlighting the byte image regions that most influenced each prediction. Evaluated on over 10,000 samples spanning nine malware families, the proposed system achieves a macro-average F1-score of 92%, outperforming CNN and standard GCN baselines while maintaining the interpretability that security analysts require.

KEYWORDS

Malware Detection Graph Neural Networks DeeperGCN Explainable AI Grad-CAM Bytecode Visualisation Cybersecurity Multi-class Classification.

Cite This Article

Durva Joshi, Rikisha Ubale, Reena Ughade, Manisha Darak, "Bytecode-to-Graph: Multi-Class Malware Classification via Modified Deep GCN with Explainability Overlay," International Journal of Scientific Research in Engineering and Management, vol. 10, no. 6, pp. 1-9, Jun 2026.

Full Article/Conclusion

This paper has presented a multi-class malware detection system that combines a modified DeeperGCN classifier with Grad-CAM-based explainability, achieving a macro-averaged F1-score of 92.1% across nine malware families on a benchmark dataset of more than 10,000 samples. The approach addresses two longstanding limitations of prior work: the inability of flat image representations to capture structural relationships within binaries, and the lack of interpretable outputs that security professionals can act on. By transforming binaries into graph structures and pairing the classifier with visual heatmaps, the system is both more accurate than CNN and standard GCN baselines and more transparent in its reasoning. The integration of both ASM-level structural features and raw byte-level data into a unified graph representation has been shown through ablation experiments to provide meaningful gains over either source alone. The HexaGuard web interface extends these capabilities to practical deployment, generating threat reports alongside heatmaps in a format accessible to analysts without specialist machine learning knowledge.

References

[1]        Z. Zhang, L. Yilmaz and B. Liu, “A Critical Review of Inductive Logic Programming Techniques for Explainable AI,” IEEE Trans. Neural Netw. Learn. Syst., vol. 35, no. 8, pp. 10220–10236, Aug. 2024. [2]        D. Vlahek and D. Mongus, “An Efficient Iterative Approach to Explainable Feature Learning,” IEEE Trans. Neural Netw. Learn. Syst., vol. 34, no. 5, pp. 2606–2618, May 2023. [3]        T. Zebin, S. Rezvy and Y. Luo, “An Explainable AI-Based Intrusion Detection System for DNS Over HTTPS (DoH) Attacks,” IEEE Trans. Inf. Forensics Security, vol. 17, pp. 2339–2349, 2022. [4]        S. Ali, O. Abusabha, F. Ali, M. Imran and T. Abuhmed, “Effective Multitask Deep Learning for IoT Malware Detection and Identification Using Behavioral Traffic Analysis,” IEEE Trans. Netw. Service Manag., vol. 20, no. 2, pp. 1199–1209, June 2023. [5]        S. Lai, W. Luan and J. Tao, “Explore Your Network in Minutes: A Rapid Prototyping Toolkit for Understanding Neural Networks with Visual Analytics,” IEEE Trans. Vis. Comput. Graph., vol. 30, no. 1, pp. 683–693, Jan. 2024. [6]        B. Esmaeili, A. Azmoodeh, A. Dehghantanha, H. Karimipour, B. Zolfaghari and M. Hammoudeh, “IIoT Deep Malware Threat Hunting: From Adversarial Example Detection to Adversarial Scenario Detection,” IEEE Trans. Ind. Inform., vol. 18, no. 12, pp. 8477–8486, Dec. 2022. [7]        D. Trizna, L. Demetrio, B. Biggio and F. Roli, “Nebula: Self-Attention for Dynamic Malware Analysis,” IEEE Trans. Inf. Forensics Security, vol. 19, pp. 6155–6167, 2024. [8]        S. Zillien and S. Wendzel, “Weaknesses of Popular and Recent Covert Channel Detection Methods and a Remedy,” IEEE Trans. Dependable Secure Comput., vol. 20, no. 6, pp. 5156–5167, Nov.–Dec. 2023. [9]        L. Nataraj, S. Karthikeyan, G. Jacob and B. S. Manjunath, “Malware images: Visualization and automatic classification,” in Proc. 8th Int. Symp. Visualization for Cyber Security (VizSec), 2011, pp. 1–7. [10]      R. R. Selvaraju et al., “Grad-CAM: Visual explanations from deep networks via gradient-based localization,” Int. J. Comput. Vis., vol. 128, no. 2, pp. 336–359, 2020.

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Publication Date

6/25/2026

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Double-Blind Peer Review

Review Rounds: 2

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