Crossref DOIMemberCiteFactoropen accessissn
SJIF Impact Factor 8.659 | ISSN: 2582-3930
IJSREM Logo

International Journal of Scientific Research in Engineering and Management

(Gateway to Global Scholars - An International, Scholarly, Multi-Disciplinary, Open Access Journal)

Peer-Reviewed Journal Designed to Meet UGC's Quality Parameters

HomeCurrent IssuePast IssuesPay OnlineConferencesEditorial BoardAbout UsContact Us
IJSREM

Loading article...

Follow Us

  • Google Scholar
  • ResearchGate
  • Academia.edu
  • Mendeley
  • LinkedIn
  • Facebook
  • Instagram

Journal Policies

  • Peer Review Policy
  • Publication Ethics
  • Copyright Infringement
  • Refund & Cancellation Policy
  • Terms and Conditions
  • Privacy Policy

Journal Identifiers & Licenses

  • ISSN Verified: 2582-3930ISSN Verified: 2582-3930
  • Crossref DOI: 10.55041Crossref DOI: 10.55041
  • SJIF Ranking: 08.659SJIF Ranking: 08.659
  • Licensed under CC BY 4.0Licensed under CC BY 4.0
  • ISO Certification: 9001:2015ISO Certification: 9001:2015
  • Indexed & Cited In: Google ScholarIndexed & Cited In: Google Scholar

Contact Us

International Journal of Scientific Research in Engineering and Management (IJSREM)

#62/1, New No 7, 1st Cross, 2nd Main, Ganganagar, R T Nagar, Bangalore North, Bangalore, Karnataka, India – 560032
[email protected]+91 93911 67991
logos
logos
Working Hours

Mon – Sat: 9:00 AM – 6:00 PM

Sunday: 10:00 AM – 4:00 PM

+91 93911 67991

© 2026 IJSREM – International Journal of Scientific Research in Engineering and Management. This is an open-access journal. Articles are published under the Creative Commons Attribution (CC BY 4.0) License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

DisclaimerPrivacy PolicyTerms and Conditions
ArticlePeer ReviewedOpen AccessPlagiarism Passed
Paper ID:IJSREM63617

Translating Genomic Variants Into Clinical Insights: An Advanced AI-Enabled Framework for Multi-Phenotype Disease Classification.

Stream/Area:

-

Subject:

-

Paper ID:

IJSREM63617

Volume:

10 |

5 |

May 2026

Pages:

1-5

Publication Frequency:

Monthly (12 issues per year)

DOI
Digital Object Identifier
10.55041/IJSREM63617

License:International Journal of Scientific Research in Engineering and Management follows the Creative Commons Attribution 4.0 (CC BY 4.0) License, allowing free use and distribution with proper attribution.

Share this article:

Authors

Harshal Thapa

Harshal Thapa

INFORMATION TECHNOLOGY

G. H. RAISONI COLLEGE OF ENGINEERING NAGPUR

Download Author Certificate
Yash Biloriya

Yash Biloriya

INFORMATION TECHNOLOGY

G. H. RAISONI COLLEGE OF ENGINEERING NAGPUR

Download Co-Author Certificate
Krishna Yadav

Krishna Yadav

INFORMATION TECHNOLOGY

G. H. RAISONI COLLEGE OF ENGINEERING NAGPUR

Download Co-Author Certificate
AJ

Ajinkya Joshi

INFORMATION TECHNOLOGY

G. H. RAISONI COLLEGE OF ENGINEERING NAGPUR

Download Co-Author Certificate

Mentors

PPB

Prof. Pradeep Barde

INFORMATION TECHNOLOGY

G. H. RAISONI COLLEGE OF ENGINEERING NAGPUR

Download Mentor Certificate

Author Services & Downloads

Full ArticlesAcceptance Certificate

Abstract

Genetic diseases, driven by variations or mutations in DNA sequences, present major diagnostic challenges across populations. Early detection of genetic predispositions is essential for effective diagnosis, personalized healthcare, and preventive treatment. However, laboratory-based testing remains costly and time-consuming. This work presents a machine learning–based framework for classifying and predicting five major genetic disease phenotypes—cardiovascular disorders, hereditary cancer syndromes, inborn genetic diseases, Fanconi anemia, and devel-opmental epileptic encephalopathies—using curated data from the NIH ClinVar database. The dataset was preprocessed to enhance consistency and model generalization, incorporating key genomic attributes such as variant type, gene symbol, HGNC ID, chromosomal assembly, and allele information. Multiple supervised algorithms, including XGBoost, were evaluated using accuracy, precision, recall, and F1-score. The best-performing model was deployed through a RESTful API and integrated with a web-based interface to support real-time predictions. Experimental results demonstrate the feasibility of automating genomic risk assessment, advancing precision medicine through scalable, interpretable, and data-driven genetic diagnostics.

KEYWORDS

Index Terms—Genomic Variants XGBoost Phenotype Disease Classification

Cite This Article

Harshal Thapa, Yash Biloriya, Krishna Yadav, Ajinkya Joshi, Prof. Pradeep Barde, "Translating Genomic Variants Into Clinical Insights: An Advanced AI-Enabled Framework for Multi-Phenotype Disease Classification.," International Journal of Scientific Research in Engineering and Management, vol. 10, no. 5, pp. 1-5, May 2026. https://doi.org/10.55041/IJSREM63617

Full Article/Conclusion

This research successfully demonstrated the development and deployment of a machine learning–based system for predicting genetic diseases directly from DNA variant data. By leveraging curated variant annotations, advanced feature engi-neering, and rigorous hyperparameter optimization, the model achieved high accuracy and robustness in classifying multiple clinically significant genetic disorders. The integration of the model into a user-friendly web application and REST API supports practical applicability in clinical and research envi-ronments, offering accessible decision support for genetic risk assessment.The system’s modular architecture and intuitive interface bridge the gap between complex genomic data and actionable insights, empowering users to understand their condition through clear explanations and to connect directly with local medical professionals for consultation. Despite promising results, future work will focus on expanding training with diverse real-world datasets, addressing rare variants, and incorporating explainable AI methods to further enhance clin-ical interpretability and trust. Overall, this work illustrates the transformative potential of combining machine learning with genomic information to accelerate precise disease diagnostics and advance personalized medicine. Continued innovation and integration will further solidify computational tools as indispensable assets in healthcare.

References

[1]     ClinVar  Updates.  (2025).  Nucleic  Acids  Research,  53(D1), D1313–D1320. https://doi.org/10.1093/nar/gkad1072Asif, M., Khan, M. A., & Ahmad, A. (2018). Identifying disease genes using machine learning and gene functional similarity based on Gene Ontology. BMC Genomics, 19, 160. https://doi.org/10.1186/s12864-018-4540-x [2]     Li, W., Chen, X., Zhang, H., & Peng, Y. (2024). CBGDA: a manually curated resource for gene–disease associations based on genome-wide CRISPR screens. Database, 2024, baae077. https://doi.org/10.1093/database/baae077 [3]     Luo, Y., Zhang, J., & Li, Q. (2021). Machine learning-based genetic diagnosis models for hearing-loss associated DNA vari-ants. European Journal of Medical Genetics, 64(8), 104351. https://doi.org/10.1016/j.ejmg.2021.104351 [4]     Raza, S., Karve, A., & Khan, J. (2022). Predicting genetic disorder and types of disorder using machine learning. Com-putational and Structural Biotechnology Journal, 20, 704–713. https://doi.org/10.1016/j.csbj.2022.01.034 [5]     Landrum, M. J., Lee, J. M., Benson, M., Brown, G. R., Chao, C., Clark, K., et al. (2018). ClinVar: improving access to variant interpretations and supporting evidence. Nucleic Acids Research, 46(D1), D1062–D1067. https://doi.org/10.1093/nar/gkx1153 [6]     Kapplinger, J. D., Landstrom, A. P., Salisbury, B. A., & Ackerman, M. J. (2020). Evaluating variants classified as pathogenic in Clin-Var in the DDD study. Genetics in Medicine, 22(11), 1904–1911. https://doi.org/10.1038/s41436-020-01021-9 [7]     Nature Genetics Consortium. (2022). Genetic associations of protein-coding variants in human disease. Nature Genetics, 54(2), 178–190. https://doi.org/10.1038/s41586-022-04394-w [8]     Patel, R., Sharma, A., & Kundra, S. (2025). Machine learning prog-nostics for genetic disorder prediction. Journal of Healthcare Analytics, 1(1), 45–50. (Preprint available) [9]        Khapekar, S. H., et al. (2024). AI-Driven Data Analytics Within Digital Twins: Transformative Potential and Ethical Consideration. In Digital Twin Technology and AI Implementations in Future-Focused Businesses. IGI Global Scientific Publishing, pp. 61–69. [10]    Prasad, R. R., et al. (2025). Leveraging Big Data in Learning Analytics.

Editorial & Review Transparency

Publication Date

5/21/2026

Peer Review Type

Double-Blind Peer Review

Review Rounds: 2

Documents

Review Report (Confidential)
Copyright Form (Office)

Article Metrics & Impact

Article Views

0

Total views since publication

PDF Downloads

2

Total downloads since publication

Geographic Reach

5

Indexing, Archiving & Preservation

Google Scholar
Academia
ResearchGate
Crossref
SSRN
Semantic Scholar
Thomson Reuters
WorldCat
Mendeley
OpenAlex
EBSCO
Zenodo

Digital Preservation: This article is permanently archived on Zenodo and complies with all data preservation standards across major indexing platforms.

Ethics, Compliance & Transparency

Plagiarism Screening

This manuscript has been checked for plagiarism using TurnitinPlagiarismChecker software.

Conflict of Interest

The authors declare no conflict of interest related to this research work.

Funding Information

No funding information available for this research.

Similar & Recommended Articles

Similar Articles by Topic

Related research in the same subject area

Loading similar articles...